About the Lab

The Disease Biophysics Group (DBG) at Harvard University is an interdisciplinary team of biologists, physicists, engineers and material scientists actively researching the structure/function relationship in cardiac, neural, and vascular smooth muscle tissue engineering. We seek to quantify cellular mechanotransduction at the single-cell and tissue level to understand the effect on electrophysiology and disease states.

Cardiac Research

Our group’s primary research focus is on understanding cellular mechanotransduction in the heart. Specifically, we are interested in how extracellular matrix and cytoskeletal architecture potentiate and modulate the activation of mechanochemical and mechanoelectrical signaling pathways and genetic programs in cardiac cells and tissues. In order to study these mechanisms at different spatial scales, we use cellular and tissue engineering techniques that allow us to build custom-designed cardiac myocytes and ventricular tissue constructs as experimental preparations.

Why are we interested in this problem of biological scaling in the heart?

The Cardiac Arrhythmia Suppression Trial (CAST) of the late 1980’s was a clinical trial designed to test the hypothesis that suppression of premature ventricular contractions (PVC) with Class I antiarrhythmics (blockers of excitatory sodium currents) would reduce arrhythmic death risk. The trial was ended prematurely by the FDA when the mortality rate of those patients on encainide and flecainide, the Class I drugs studied, nearly quadrupled the mortality rates of those patients on placebo. Subsequent studies of antiarrhythmic drugs indicate that drugs that alter ion channel kinetics often show little or no benefit in the suppression of ventricular tachycardia and ventricular fibrillation. To date, there is no clinically reliable means of treating cardiac arrhythmias medicinally.

How are we approaching this problem?

We hypothesize that single channel blockade antiarrhythmic strategies were inherently flawed because they target a single scale (molecular level) without considering the fact that the pathogenesis of arrhythmias transcends multiple levels of integration, i.e., it is a multiscale problem. We propose that increasing the spatial scale of the drug target search, from single proteins to protein networks, will result in the development of more effective antiarrhythmic medicinal therapies. Thus, we take a multiscale approach, by targeting several spatial magnitudes simultaneously. At the length scale of a single cell, we study the cytoskeletal networks that span the entirety of the cardiac myocyte and modulate the kinetics of many of the more than half dozen ion channels that contribute to the cardiac action potential. More specifically, we investigate 1) how the cardiac myocyte cytoskeleton self-assembles; and, 2) the role of cytoskeletal architecture modulating action potential morphology and calcium metabolism. In tissue-scale studies, we investigate cell ensembles and correlate their behavior to larger tissue and whole heart function. Cell-cell mechanocoupling, via cell adhesion proteins and extracellular matrix, undoubtedly contributes to the electrical synchrony amongst cardiac myocytes. Here, more specific studies are directed towards investigating how the mechanical continuity amongst cardiac myocytes modulates electrical excitability and may contribute to the wavebreaks that mark the transition from ventricular tachycardia to ventricular fibrillation.

Immunofluorescence Staining of Micropatterned Cardiac Myocytes

FIGURE: Microcontact Printing used to control Cardiomyocyte geometry and cellular architecture. For all Images: Sarcomeric actin labeled in green, sarcomeric alpha-actinin (Z-lines) marked in red, nucleus marked in blue.
A: Adult Rat Cardiac Myocyte without structural modification (nucleus not shown).
B: Neonatal Rat Cardiac Myocyte without structural modification, cultured on a monolayer of extracellular matrix protein.
C: Neonatal Rat Cardiac Myocyte cultured on a rectangular island of extracellular matrix protein.
D: Neonatal Rat Cardiac Myocyte cultured on a triangular island of extracellular matrix protein.
E: Neonatal Rat Cardiac Myocyte cultured on a square island of extracellular matrix protein.
F: Neonatal Rat Cardiac Myocyte cultured on a circular island of extracellular matrix protein.

Detection, Characterization and Visualization of Calcium Sparks In Micropatterned Cardiac Myocytes
Primary Investigator: Mark Bray, Ph.D.

The cytoarchitecture of the myocyte has been determined to be critical in understanding not only mechanical contraction of the cell but also electrical propagation. Knowledge of this mechanotransduction mechanism has implications in the treatment of stretch-activated arrhythmias, as well as understanding the role of the extracellular environment on intracellular signaling pathways. Our objective is to micropattern myocytes into various shapes and examine spark occurrence as a function of cell shape. The expectation is that cell shapes which incorporate regions of high mechanical cellular stress will modulate calcium spark characteristics as the cytoskeleton reconfigures itself accordingly. A critical and novel component of this project is the development of software able to detect and visualize sparks in two-dimensions.

FIGURE: Fluorescence map of square cell (top left) and with background fluorescence subtracted (bottom left). Visualization of spark boundaries with respect to (x,y,t), shown in red (right).

Visualization of Calcium Sparks in Cardiac Myocytes

Estimation of Contractile Stress on Cardiac Myocytes
Primary Investigator: Poling Kuo, M.D.

We hypothesize that mechanical coupling between cells plays a critical role both in the normal and pathological development of cardiac tissues. We are using traction force microscopy to map the contractile stresses of micropatterned neonatal rat cardiomyocytes.

FIGURE: Relative stress field of cardiac myocytes exhibited by red vectors. The bottom black scale bar represents 10 um.

Analysis of Traction Forces In Contractile Cardiac Myocytes
Grp_photo_Jan 2014_305W_230H

What's New

Congratulations to Karaghen Hudson, Leila Deravi & Nina Sinatra on the cover of Macromolecular Materials and Engineering! March 27th, 2017

Parker Lab Artist Karaghen Hudson’s illustration accompanying Leila Deravi & Nina Sinatra’s paper “Design and Fabrication of Fibrous Nanomaterials Using Pull Spinning” was chosen for the March 2017 cover of Macromolecular Materials and Engineering.



Pull spinning is a new nanofiber manufacturing technique that uses a high-speed rotating bristle to draw anisotropic nanofibers from a polymer solution. The versatile structure and composition of scaffolds formed using pull spinning enables a wide range of applications, including muscle tissue engineering and textile design.

Congratulations to George Touloumes! March 21st, 2017

Congratulations to Parker Lab PhD student George Touloumes who has been awarded an NSF Graduate Research Fellowship.

Congratulations to Ben Pope! March 21st, 2017

Congratulations to Parker Lab Postdoc Ben Pope who was recently awarded a Life Sciences Research Foundation Fellowship sponsored by the Good Ventures Foundation.

Congratulations Grant Gonzalez and Michael Rosnach on the cover of Macromolecular Materials and Engineering! January 23rd, 2017

Parker Lab Artist Michael Rosnach’s illustration accompanying PhD Student Grant Gonzalez’s paper “Production of synthetic, para-aramid and biopolymer nanofibers by immersion rotary jet-spinning” was chosen for the January 2017 cover of Macromolecular Materials and Engineering.


mame201600365_Cover Art Submission


“Utilizing a precipitant vortex, a novel nanofiber platform produces Kevlar, nylon, DNA, and alginate nanofibers for high-performance composites and tissue engineering applications.”

Congratulations to Ian Perkins & Alex Cho! January 5th, 2017

The DBG would like to congratulate Ian Perkins and Alex Cho who both graduated from Northeastern University in December. Ian received his B.S. in Mechanical Engineering and Alex his B.S. in Biology. We would like to thank you both for your significant contributions to the DBG over the past several years, and we are grateful that you are both continuing with us in the lab this semester!