Source Code / Test Data
The material here is based on the algorithm described in Mark-Anthony Bray, Nicholas A. Geisse and Kevin Kit Parker, “http://www.biophysj.org/cgi/content/abstract/92/12/4433,” Biophysical Journal, 92(12): pg 4433 – 4443.
Movie (supplemental data) – Movie recorded from an isotropic monolayer of neonatal rat cardiac myocytes, loaded with the Ca2+ sensitive dye Fluo-4. The tissue exhibits several tissue-wide calcium transients, accompanied by spark activity.
Available Files
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Distribution details, including specifics of the files available.
Please see the distribution file for details on the source code and the format and contents of the test data. - MATLAB source code and GPL for spark detection.
- Spark synthetic data with uniform background flourescence, ZIP file, 65.6 MB.
- Spark synthetic data with Ca2+ reuptake background flourescence, ZIP file, 65.6 MB.
License
This toolbox is released under the GNU General Public License. This is a copyleft license, which means you have the freedom to use, distribute and modify the code, but only on the condition that you must pass on this freedom. You can integrate this code into proprietary packages, but you must do so according to this rule. That is, some parts of your proprietary package will not have this freedom, but those parts derived from this code must retain that freedom. You must use, distribute and develop the code herein in accordance with the GPL.
